Quantification of microbial species in solid state fermentation samples using signature genomic sequences

Zhaohui Xu; Pooja Yadav; Zhizhou Zhang; Sankardas Roy; Huimin Zhang

doi:10.1109/BIBM.2017.8217781

Quantification of microbial species in solid state fermentation samples using signature genomic sequences

Zhaohui Xu, Pooja Yadav, Zhizhou Zhang, Sankardas Roy, Huimin Zhang

Department of Biological Sciences

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Original language	English
Title of host publication	Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017
Editors	Illhoi Yoo, Jane Huiru Zheng, Yang Gong, Xiaohua Tony Hu, Chi-Ren Shyu, Yana Bromberg, Jean Gao, Dmitry Korkin
Publisher	Institute of Electrical and Electronics Engineers Inc.
Pages	927-932
Number of pages	6
ISBN (Electronic)	9781509030491
DOIs	https://doi.org/10.1109/BIBM.2017.8217781
State	Published - Dec 15 2017
Event	2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017 - Kansas City, United States Duration: Nov 13 2017 → Nov 16 2017

Publication series

Name	Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017
Volume	2017-January

Conference

Conference	2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017
Country/Territory	United States
City	Kansas City
Period	11/13/17 → 11/16/17

ASJC Scopus Subject Areas

Biomedical Engineering
Health Informatics

Keywords

Fermentation
K-mers
Microbial community
Relative abundance
Signature sequences

Access to Document

10.1109/BIBM.2017.8217781

Cite this

Xu, Z., Yadav, P., Zhang, Z., Roy, S., & Zhang, H. (2017). Quantification of microbial species in solid state fermentation samples using signature genomic sequences. In I. Yoo, J. H. Zheng, Y. Gong, X. T. Hu, C.-R. Shyu, Y. Bromberg, J. Gao, & D. Korkin (Eds.), Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017 (pp. 927-932). (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; Vol. 2017-January). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/BIBM.2017.8217781

Quantification of microbial species in solid state fermentation samples using signature genomic sequences. / Xu, Zhaohui; Yadav, Pooja; Zhang, Zhizhou et al.
Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. ed. / Illhoi Yoo; Jane Huiru Zheng; Yang Gong; Xiaohua Tony Hu; Chi-Ren Shyu; Yana Bromberg; Jean Gao; Dmitry Korkin. Institute of Electrical and Electronics Engineers Inc., 2017. p. 927-932 (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; Vol. 2017-January).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Xu, Z, Yadav, P, Zhang, Z, Roy, S & Zhang, H 2017, Quantification of microbial species in solid state fermentation samples using signature genomic sequences. in I Yoo, JH Zheng, Y Gong, XT Hu, C-R Shyu, Y Bromberg, J Gao & D Korkin (eds), Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017, vol. 2017-January, Institute of Electrical and Electronics Engineers Inc., pp. 927-932, 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017, Kansas City, United States, 11/13/17. https://doi.org/10.1109/BIBM.2017.8217781

Xu Z, Yadav P, Zhang Z, Roy S, Zhang H. Quantification of microbial species in solid state fermentation samples using signature genomic sequences. In Yoo I, Zheng JH, Gong Y, Hu XT, Shyu CR, Bromberg Y, Gao J, Korkin D, editors, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Institute of Electrical and Electronics Engineers Inc. 2017. p. 927-932. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017). doi: 10.1109/BIBM.2017.8217781

Xu, Zhaohui ; Yadav, Pooja ; Zhang, Zhizhou et al. / Quantification of microbial species in solid state fermentation samples using signature genomic sequences. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. editor / Illhoi Yoo ; Jane Huiru Zheng ; Yang Gong ; Xiaohua Tony Hu ; Chi-Ren Shyu ; Yana Bromberg ; Jean Gao ; Dmitry Korkin. Institute of Electrical and Electronics Engineers Inc., 2017. pp. 927-932 (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017).

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title = "Quantification of microbial species in solid state fermentation samples using signature genomic sequences",

keywords = "Fermentation, K-mers, Microbial community, Relative abundance, Signature sequences",

author = "Zhaohui Xu and Pooja Yadav and Zhizhou Zhang and Sankardas Roy and Huimin Zhang",

note = "Publisher Copyright: {\textcopyright} 2017 IEEE.; 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017 ; Conference date: 13-11-2017 Through 16-11-2017",

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doi = "10.1109/BIBM.2017.8217781",

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AU - Xu, Zhaohui

AU - Yadav, Pooja

AU - Zhang, Zhizhou

AU - Roy, Sankardas

AU - Zhang, Huimin

PY - 2017/12/15

Y1 - 2017/12/15

KW - Fermentation

KW - K-mers

KW - Microbial community

KW - Relative abundance

KW - Signature sequences

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U2 - 10.1109/BIBM.2017.8217781

DO - 10.1109/BIBM.2017.8217781

M3 - Conference contribution

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T3 - Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017

SP - 927

EP - 932

BT - Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017

A2 - Yoo, Illhoi

A2 - Zheng, Jane Huiru

A2 - Gong, Yang

A2 - Hu, Xiaohua Tony

A2 - Shyu, Chi-Ren

A2 - Bromberg, Yana

A2 - Gao, Jean

A2 - Korkin, Dmitry

PB - Institute of Electrical and Electronics Engineers Inc.

T2 - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017

Y2 - 13 November 2017 through 16 November 2017

ER -

Quantification of microbial species in solid state fermentation samples using signature genomic sequences

Publication series

Conference

ASJC Scopus Subject Areas

Keywords

Access to Document

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